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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaattttctagtagtgtgatgtgatatagatttcataatattttacttgtgatagatttcagaatatatttctatgttgttataaagtgattcac...

Basic information

species Glycine max
transcript GLYMA17G00250.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396313|gb|AI495310.1|AI495310
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTC
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTC
EST: gi|151409763|gb|EV279571.1|EV279571
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|254326666|gb|GR832818.1|GR832818
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|298184274|gb|HO029487.1|HO029487
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAAC
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAAC
EST: gi|298166707|gb|HO010146.1|HO010146
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|192300665|gb|FG991077.1|FG991077
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|192326423|gb|FK015925.1|FK015925
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|298178229|gb|HO023964.1|HO023964
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|7795909|gb|AW781306.1|AW781306
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTAT
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTAT
EST: gi|58022692|gb|CX709433.1|CX709433
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|15286015|gb|BI469906.1|BI469906
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaattttctagtagtgtgatgtgatatagatttcataatattttacttgtgatagatttcagaatatatttctatgttgttataaagtgattcac

- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG