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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTATCGCGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtaagatcaatagatggttaatgttatttatttcaaaatggttttaagtttttcaaactttagcatgtaaggatttatatcaaatttcctgtgggaagtg...

Basic information

species Glycine max
transcript GLYMA16G34510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 5
GTCCTATCGCGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtaagatcaatagatggttaatgttatttatttcaaaatggttttaagtttttcaaactt-tagcatgtaaggatttatatcaaatttcctgtgggaagtg-
 || || || || |||||||||||||||||  | || |||||||| ||||| ||||| |||||||||||||| ||  | || |||||||| ||||| ||||||||     |   ||  ||  | |  ||    ||      | |||| |  ||  | ||  | || |   |   | | | | |     | ||| |    |  
ATCTTACCGTGCACCTGAGGTTATTTTGGGTTTGCCTTATGACAAAAAGATAGATATGTGGTCACTTGGATGTATACTAGCTGAACTTTGCACTGGAAATgtaag--tggttactgcataccggttattgcaccacttaattgttaaatcctttcatctcatggctttctattttctttttgactgaacttgtcgctgtttt

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 5
GTCCTATCGCGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtaa--gatcaatagatggttaatgttatttatttcaaaatggttttaagtttttcaaactttagcatgtaaggatttatatcaaatttcctgtgggaagtg-
 || || || || |||||||||||  ||||  | || |||||||| ||||| ||||| ||||||||||| || || || ||||||||||| ||||| |||||||  | | | |  ||  |   |  ||||   |||| ||  ||| |   | |    |   |||   |||      | || |     |        | |||  
ATCTTACCGTGCACCTGAGGTTATACTGGGCTTGCCTTATGACAAAAAGATAGATATATGGTCACTTGGTTGTATATTAGCAGAACTTTGCACTGGAAATgtaagtggttactgcatattggctaatattg--ttcataactgttattgctatacttatggtta-tgtgttgttcatgatgttctggtaatgtaaaggagtag

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCCTATCGCGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtaagatcaa---tagatggttaatgttatttatttcaaaatggttttaagtttttcaaact--ttagcatgtaaggatttatatcaaatttcctgtgggaagtg
 ||||| || ||||| || || ||| | |||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || |   | |||| |    ||||     || | |||  | |  | |     || ||   ||| |    |  || ||  |    | | || | | |    
ATCCTACCGTGCTCCAGAAGTCATTCTTGGGCTTCCATATGATAAAAAGATAGATATCTGGTCACTTGGCTGCATTTTGGCAGAACTATGTACCGGCAATgtaagttccagcatcgatgataccagttaaaagctttataattatat--aatccactaagctagctaggaccctataatgtaacttgcgtctgcttttgcag---

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 11
GTCCTATCGCGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtaagatcaatagatggttaatgttatttatttcaaaatggttttaagtttttcaaactttagcatgtaaggatttatatcaaatttcctgtgggaagtg------
||| ||||| || || ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| || |||||||| |||||||| ||||||||||||||  |  ||  |  |   |||| ||    |  | |||     || | |  ||| |  | |  |||     ||| | ||   |||  ||  | || |       
GTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATgtaagtactgtatttcatggttgtttttctcctacatatg-----aattatggcaagcagtggagtgtttttctttct-tctccttttttggagaaaataggtagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567092|gb|AW234719.1|AW234719
EST:     TTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAAT                         GTCCTCTTCCAAAATGATTCC
genomic: TTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATgtaagatcaa ... cattatatagGTCCTCTTCCAAAATGATTCC