1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAGGTCTATTCATGGTGCTGAGGGAAGGAAGGATGCGTCGTCTTGTCATGTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAGgtattcttctattattaatagtatcatactattattttggttaaaacaaactggtctcttatcttattttgtgatttaagtttagtctcttaaacttaaa...
species | Glycine max |
transcript | GLYMA16G33520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAG GTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAAEST: gi|214004750|gb|DB984888.1|DB984888
genomic: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAGgtattcttct ... acaattgcagGTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAA
EST: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAG GTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAAEST: gi|27423811|gb|CA935331.1|CA935331
genomic: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAGgtattcttct ... acaattgcagGTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAA
EST: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAG GTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAEST: gi|31465761|gb|CD407789.1|CD407789
genomic: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAGgtattcttct ... acaattgcagGTATGTACAGGCACCCTTAGCTTACCCAAGGGAAA
EST: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAG GTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAA
genomic: GTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAGgtattcttct ... acaattgcagGTATGTACAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGTCTATTCATGGTGCTGAGGGAAGGAAGGATGCGTCGTCTTGTCATGTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTTGATGGTATCAGgtattcttctattattaatagtatcatactattattttggttaaaacaaactggtctcttatcttattttgtgatttaagtttagtctcttaaacttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaaa