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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAAgtatgaattcattgatgaggtaatgttagaatgaggaaaacaaagagtacaacataaacaagttaaaagatgcagatttgtccattttcctgtgccaaagatctgaatttttttcttatttttgagataagaatgtatttggtatgtttgctggatgcaatcaacttatactttcaactgaaaatttgggtatacag

Basic information

species Glycine max
transcript GLYMA16G33080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 5'ss of exon 4
GGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAAgtatgaattcattgatgaggtaatgttagaatgaggaaaacaaagagtacaacataaacaagttaaaagatgcagatttgtccattttcctgtgccaaagatctgaatttttttcttatttttgagataagaatgtatttggtatgtttgctggatgcaatcaacttatactttcaactgaaaatttgggtatacag
| || ||  |||||||||| ||| | ||||| |||||||||||||| |||||  || ||||||||||||| || |||||||||||| |  | | | |            ||  ||||   ||     | || ||| |||    | | |   || |    | |||   |  ||    ||   |||   | ||  |                                                                                       
GTAAAACTCTACTTGCTAAGACATTAGCTCGCTTTGTGAATGTGCCATTTGTAATTGCTGATGCAACAACATTGACACAGgcaagtctttactaact------------tttaaatgcataatgtcca-agcaca-catctttatgatttgagctcattacttgcaaaagttaaaatggtgaagccattaaact---------------------------------------------------------------------------------------

upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G050186_T03 (Zea mays), 5'ss of exon 3
--------------------GGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAAgtatgaattcattgatgaggtaatgttagaatgaggaaaacaaagagtacaacata-aacaagttaaaagatgcagatttgtccattttcctgtgccaaagatctgaatttttttcttatttttgagataagaatgtatttggtatgtttgctggatgcaatcaacttatactttcaactgaaaatttgggtatacag
                    | || || |||||||| || ||| | ||||| ||||||||||| || |||||  || ||||||||||||| || || |||||||||||    | | | |    |   |  ||||  || |   | |  |  || | || | |||||     |   |  ||             | |    ||| ||                                                                                                
ACGGTTCATTTCTTTCACAGGTAAAACTTTACTTGCAAAGACATTAGCTCGTTTTGTGAATGTACCATTTGTAATTGCTGATGCAACAACATTGACCCAGgcaagtat----ttactaacattgccct-ctagagagaagtgcatattggtta-agcacacaacaaacatcattgtatagggagtattgcaggcattcatcaatga------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 4
GGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAAgtatgaattcattgatgaggtaatgttagaatgaggaaaacaaagagtacaacata-aacaagttaaaagatgcagatttgtccattttcctgtgccaaagatctgaatttttttcttatttttgagataagaatgtatttggtatgtttgctggatgcaatcaacttatactttcaactgaaaatttgggtatacag
| || || |||||||| || ||| | ||||| ||||||||||| || |||||  || ||||||||||||| || || |||||||||||    | | | |    |   |  ||||  || |   | |  |  || | || | |||||     |   |  ||             | |    ||| ||                                                                                                
GTAAAACTTTACTTGCAAAGACATTAGCTCGTTTTGTGAATGTACCATTTGTAATTGCTGATGCAACAACATTGACCCAGgcaagtat----ttactaacattgccct-ctagagagaagtgcatattggtta-agcacacaacaaacatcattgtatagggagtattgcaggcattcatcaatga------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G101791_T02 (Zea mays), 5'ss of exon 4
GGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAAgtatgaattcattgatgaggtaatgttagaatgaggaaaacaaagagtacaacataaacaagttaaaagatgcagatttgtccattttcctgtgccaaagatctgaatttttttcttatttttgagataagaatgtatttggtatgtttgctggatgcaatcaacttatactttcaactgaaaatttgggtatacag
| || || |||||||| || ||| | ||||| ||||||||||| || |||||  || |||||||||| || ||||| |||||||||||       ||| | |  |    ||  |  ||| |   ||     ||     ||||||    |||| | ||  || | |  |   |  ||     |  |||                                                                                              
GTAAAACTTTACTTGCAAAGACATTAGCTCGTTTTGTGAATGTACCATTTGTAATTGCTGATGCAACGACATTAACCCAGgcaagtat-------ttgttaacattgccttctagagagaagtgca-----tattggttaaacacac-aaaaaacgccaatctatagagagtattgcaggcatcatcaatgac----------------------------------------------------------------------------------------

upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 4
GGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAAgtatgaattcattgatgaggtaatgttagaatgaggaaaacaaagagtacaacataaacaagttaaaagatgcagatttgtccattttcctgtgccaaagatctgaatttttttcttatttttgagataagaatgtatttggtatgtttgctggatgcaatcaacttatactttcaactgaaaatttgggtatacag
| || ||||||||||| |||||||| ||||| |||||||||||||| |||||| || |||||||||||||| | |||||||  ||| | | || |||  | |  || | ||  |||     |||       ||      | |   |||   |     |  |||||  |||  | | |  |                                                                                                     
GAAAAACATTACTTGCAAAAACACTTGCTCGTTTTGTGAATGTGCCCTTTGTCATTGCTGATGCAACAACCCTTACACAGgtgagtgttactttatttttcacttattattgaaattgtacaaaatttatatatttttaatatctgtttgcatgccaatttttgtatattaacttttaac-----------------------------------------------------------------------------------------------------