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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAGATTCGTTTCGGGTCAGCAAGTCAAAGTTTTTGGCAGAAGAAAGTCTTCTCCAGCCTCAGATTCTTCTTCTGCTGGTGCCAAACCAAACCTAGCTgtttccttaaactatgttgcctcgttttacatgttctag

Basic information

species Glycine max
transcript GLYMA16G32580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0022g02290.t01 (Vitis vinifera), 5'ss of exon 2
----------------------------------------------------GGACAGATTCGTTTCGGGTCAGCAAGTCAAAGTTTTTGGCAGAAGAAAGTCTTCTCCAGCCTCAGATTCTTCTTCTGCTGGTGCCAAACCAAACCTAGCTgtttccttaaactatgttgcctcgttttacatgttctag
                                                    ||| |||||| |||| || || ||||||||||| ||||||||||||||||||||  |||| || | ||| |||  |     |          |  |  || ||     |||| || | |                    
TTGCTTGCACCATTGAGACCTTTGAAGATGGACCCCTCAAAGGTTTCTCAGTGGATAGATTCATTTCTGGACAACAAGTCAAAGTCTTTGGCAGAAGAAAgtcttcctcagcttctgcttcatctggtatcaatctgtttgttgatattcctattctgagaaacaatctag--------------------