Sequence
atgc intronic sequence ATGC exonic sequenceAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctctgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa...
Basic information
species | Glycine max |
transcript | GLYMA16G32480.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 5
AGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgct--ctgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa
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AGGGCCTGATGCTCCTATTGCATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCGgtaatacttcctgctccctcttttccctttgtgttgttgtcaattgtcttgcattgccaatattgacgtttttttgtaagttgtgaagtatagcatattc--
upper sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0036g00810.t01 (Vitis vinifera), 5'ss of exon 4
AGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctc--tgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa
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AGGGCCTGATGCTCCTATTACATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTCACAAGCCTAATCTTGCTAGTGGATATCTGgtaatacttcttgctccctcttttccctttgtgttgttgtcaattgtcttgcattgccaa-cattgacgttttttgtaagttgtgaagtatagcatattct-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192293854|gb|FG986063.1|FG986063EST: TGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCA ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCC
genomic: TGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctct ... cctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctctgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctcc