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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctctgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa...

Basic information

species Glycine max
transcript GLYMA16G32480.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 5
AGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgct--ctgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa
|||||| |||||||||||||| |||||||||||| | || || ||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||| ||  |||   |||| |     ||  | ||  |  ||       || | |   ||   |    ||  ||| | | |   |   | | |    | |  
AGGGCCTGATGCTCCTATTGCATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCGgtaatacttcctgctccctcttttccctttgtgttgttgtcaattgtcttgcattgccaatattgacgtttttttgtaagttgtgaagtatagcatattc--

upper sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0036g00810.t01 (Vitis vinifera), 5'ss of exon 4
AGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctc--tgtcacctcctcattattaattttacttgcatcataactgtactatgaagtgttgtcttagtttatgattgaagttcttttgttcttacaa
|||||| |||||||||||| | |||||||||||| | || || ||||| ||||| ||||||||||||||| ||||||| || |||||||| | |||||  ||||| ||   ||   |||| |     ||  | ||  |  ||       || | |   ||   ||| | |  ||| | | |   |   | | |    | |  
AGGGCCTGATGCTCCTATTACATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTCACAAGCCTAATCTTGCTAGTGGATATCTGgtaatacttcttgctccctcttttccctttgtgttgttgtcaattgtcttgcattgccaa-cattgacgttttttgtaagttgtgaagtatagcatattct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293854|gb|FG986063.1|FG986063
EST:     TGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCA                         ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCC
genomic: TGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctct ... cctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCC