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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataatttttaacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag

Basic information

species Glycine max
transcript GLYMA16G30160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G077222_T01 (Zea mays), 5'ss of exon 5
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataattttt--aacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag
||  | |||||||||||||| || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| |||    |      |     |   |||  |   ||    |  |  |    || |||||  ||    ||
ACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgag-gcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatat--atccatag

upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataattttt--aacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag------
      |||||||||||||| || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| |||    |      |     |   |||  |   ||    |  |  |    || |||||  ||    ||      
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAG-

upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G140874_T01 (Zea mays), 5'ss of exon 2
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataatttt-------taacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag
||  | |||||||||||||  || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| |||        |  | |  | | |  |  | || |  |||    |  |  |    || |||||  |     ||
ACTTTCTCAAAAGTGTATCTAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgag-gcatgtctcgaagctaagtttatgtatggattagtgaatcatcattgtgtaatgttatgtcattcatgttcattccaatat--acccatag

upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataatttttaacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag
|||   ||||||||||||||||| |||||||| || |||| |||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| || |  | || |     | | |||| |   |||  |        | |   | | |    ||||||  | |  | | |    ||||||
ACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATTCAAGgtgag-agtgaactt-----tgaattttgattctac--ccgaaaagaagataaacaatgaagctaaattctgtttactct----tttcag

upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 6
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataatt---tttaacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag
 |||  |||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||| | || || || || ||||||||| | | |||||||||| |  |  | |  |  |    |||   | | |      ||   ||     ||    || ||||  |   | || |   ||       |  ||
TCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATTCAAGgtgatcatcgaattttttgtacattcactctgaagtctgaatcagtgaagttatgtttaatctgctttcttcatttttcattggatagtatag

upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 6
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatca--taataatttt---taacaatacaacttgttgctat-actcatattctgtctaaataatatcaaatattgattttcag--------------------
||||||||||| || ||||| || ||||| ||||  |||  |||||| ||||||||||||||| | || || || |||||||||||||| |||||||||||| |  |  |    | |  |  | |  ||   | |  ||| |    | | ||||   |   ||     ||   |  | |   ||   || |||                       
ACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGgtgataattgattctaaacttttgagcttcgatgatgatatagaaagatcctattgtttggatatgccctttgttttgttgcattaagagttttctcactaagttggatgtttcag