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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAACAATTGGTGTGCATATGGACAATCAAAGCTTGCTAATATTTTGCATGCCAATGAACTGGCAAGGCGTCTCAAGgttgccccacaacgagtaatttattatttcattgttatgagttggttaataattttag

Basic information

species Glycine max
transcript GLYMA16G30040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30040.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 4
TTACAACAATTGGTGTGCATATGGACAATCAAAGCTTGCTAATATTTTGCATGCCAATGAACTGGCAAGGCGTCTCAAGgttgccccacaacgagtaatttattatttcattgttatgagttggttaataattttag---------------------------------------------
 ||||||       | |||||||| || ||||||||||| || ||||||||||| |||||||| || ||| |  | |||||   | ||   |   |   |||  ||    | |  |    | | |  ||  |||| |                                             
GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtg--cgcattgctcttctcttag-atcatgtcgccagttatagatatattttttttggtgcaacgctgtatttggagttatttcaattgagatatgtttatt

upper sequence: GLYMA16G30040.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G009940_T02 (Zea mays), 5'ss of exon 5
TTACAACAATTGGTGTGCATATGGACAATCAAAGCTTGCTAATATTTTGCATGCCAATGAACTGGCAAGGCGTCTCAAGgt-tgcccca--caacgagta-atttattatttcattgttatgagttg-gttaataattttag-------------------------------------
 || |  |      |||||||||| |||||||||||||| || || |||||||| |||||||| || |||||  |  |||| || |     || | |  | ||  ||  |||| |     |  | ||  |  ||| ||  |                                      
GTATAGTAGCATTGGTGCATATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGgtatgtcttgtccatctaacacatgcatgttttcttgaccttatggtgcatgtatagttacaatgcatttgtatgcattgcaactttttttctcgagcgc