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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTACCTTGTTGAGCCGGTTACGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACAgtaagctctccaattcctgtttctttctcagtctcctgtttacattagctgtttgtgagtgatcatggatttattttgggatttatctgcagactgccaa...

Basic information

species Glycine max
transcript GLYMA16G30030.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 4
GAAATTACCTTGTTGAGCCGGTTACGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACAgtaagctctccaattcctgtttctttctcagtctcctgtttacattagctgtttgtgagtgatcatggatttattttgggatttatctgcagactgccaa----
||||||    || | ||||| ||| | |||||||| ||||||||||||||||| |||||||| || ||||||    |||| |||  |||   | ||   |  | |   | || |||  | |||  | |  | ||| | || ||  |  |||  |       ||    
GAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACGgtcagctcttgtcttccagttcattt--taatcattttatgattgtggccgttgtttagt--ttactgttttgtatttggcatgttctttattacattaattgt