1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAGTTATTAATGCAGTACATGGAAAGCTTGCCTCGTAGATTTTTTGATAAAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgatttgcaactcgatatcaatttaaaatatttactcggtaacattactgagtagtagttgtctacttaacatgtccctgtattaatatgactagattatactttatttgaagttacttcagacttaacatatcatggatattcacttcttgatttctcctgtag
species | Glycine max |
transcript | GLYMA16G29590.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTCEST: gi|192294951|gb|FG986670.1|FG986670
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCCGGCATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTCEST: gi|209707454|gb|BW664913.1|BW664913
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTCEST: gi|7926391|gb|AW832417.1|AW832417
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTATTAATGCAGTACATGGAAAGCTTGCCTCGTAGATTTTTTGATAAAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgatttgcaactcgatatcaatttaaaatatttactcggtaacattactgagtagtagttgtctacttaacatgtccctgtattaatatgactagattatactttatttgaagttacttcagacttaacatatcatggatattcacttcttgatttctcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG