1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATGATATCAAGTTTGGAGTGGATAACAAAGTTGACTTCTATGCTGTTTCCTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAgtaaatatctaaaatattttaaaaatactttttaaaatttatccgattagttttgctgcatatttagattataaatatgataaattttccacttgatactgcag
species | Glycine max |
transcript | GLYMA16G28980.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGA GCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTAEST: gi|193466016|gb|FK430205.1|FK430205
genomic: TGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAgtaaatatct ... gatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTA
EST: CTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGA GCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCCA
genomic: CTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAgtaaatatct ... gatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATATCAAGTTTGGAGTGGATAACAAAGTTGACTTCTATGCTGTTTCCTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAgtaaatatctaaaatattttaaaaatactttttaaaatttatccgattagttttgctgcatatttagattataaatatgataaattttccacttgatactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA