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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGgttggttaaacaatgctgctatccagtacctatttgacttcacattttattattaccttttaatctgtaaatcattgagacgcccttgcaaagatgtaat...

Basic information

species Glycine max
transcript GLYMA16G27960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27960.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g07020.1 (Oryza sativa), 5'ss of exon 5
ATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGgttggttaaacaatgctgctatccagtacctatttgacttcacattttattattaccttttaatctgtaaatcattgagacgcccttgcaaagatgtaat
||||||||||| ||||||||| | |||||||||||||| || || || || || || || |||||||| || ||||||||  | ||| | || || ||||||    | ||  ||  |  |||  | ||  |   | |     ||    |   |||   | | | |   | ||  ||| |   |   ||||   |      
ATTCCAGTTGAGAAGCTGTTAGTTCATGATGTACCAGTTGACATTATCTGCACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgta---tgaatgattgtattatttaatattttggtaaaccggcaaaaaaacctta---tgtgacc---agatttttggggaacttctgcatgcag-----

upper sequence: GLYMA16G27960.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 5
ATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGgttggttaaacaatgctgctatc-cagtacctatttgacttcacattttattattaccttttaatctgtaaatcattgagacgcccttgcaaagatgtaat
||||| ||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || ||||||||||| || || || ||||||||||||||||||| || |  |||| || || |  || || |    | |   | |     |  |  |  ||   |              |   | ||||| ||   |  || 
ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525267|gb|BU084078.1|BU084078
EST:     TACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAG                         GAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATAC
genomic: TACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGgttggttaaa ... tttcctgcagGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATAC
EST: gi|51338397|gb|CO982263.1|CO982263
EST:     TACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAG                         GAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATAC
genomic: TACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGgttggttaaa ... tttcctgcagGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATAC