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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatatccaaattttgtccatgttatttatgggatacaacaatatcaatcttcttttcatttatatttcaatccttttatgaacttgagtttattttgcttcagctgtagttgactttgactggtctcttgatctttttgttcag

Basic information

species Glycine max
transcript GLYMA16G27570.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703751|gb|BW665024.1|BW665024
EST:     CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: gi|192327386|gb|FK018148.1|FK018148
EST:     CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: gi|208245977|gb|GE044821.1|GE044821
EST:     GGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
genomic: GGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: gi|192323243|gb|FK017409.1|FK017409
EST:     CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: gi|192295643|gb|FG990497.1|FG990497
EST:     CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: gi|213614007|gb|DB960972.1|DB960972
EST:     CATGCGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGA
EST: gi|193330348|gb|FK294912.1|FK294912
EST:     CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG                         CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatatccaaattttgtccatgttatttatgggatacaacaatatcaatcttcttttcatttatatttcaatccttttatgaacttgagtttattttgcttcagctgtagttgactttgactggtctcttgatctttttgttcag

- - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - CTGCAG