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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgattcataaacatatggtgaattttggttttagtccctataaaaattttcaatggttttggtttgcttatcatagatttaatttctttcaatat...

Basic information

species Glycine max
transcript GLYMA16G27060.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192732|gb|HO033166.1|HO033166
EST:     CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAG                         ACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
genomic: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
EST: gi|5770839|gb|AI974013.1|AI974013
EST:     ATGAAAAAGGCTTCTATGAGTGTGAG                         ACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
genomic: ATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
EST: gi|19270763|gb|BM887019.1|BM887019
EST:     CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTTTATTAGTGTGAG                         ACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
genomic: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
EST: gi|15338067|gb|BI498723.1|BI498723
EST:     CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTCTGAG                         ACTGAAGTACTGAAGCAATTATCGTCCATGGGTCGACTAGTGGTTTGTGCC
genomic: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC