Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag

Basic information

species Glycine max
transcript GLYMA16G27010.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27010.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggca--ttattatggaccctatttgtatttacatatgtacattatgcacgtcctta-gtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag
|||  | ||| |||  |||||||||||||| |||||||| ||  | || ||||| ||||| ||  | ||||| ||||||||||||||||| |||||||||||  | |   | ||    |    |  ||| | |     | | | ||      || ||||   | ||     ||||  |  ||                                   
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacag--------------------------------

upper sequence: GLYMA16G27010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag
|||| | |||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||||||||| || || ||||||||  | |  |  |   |  | | |  ||||   |||| | |  | ||   ||    | ||||||  | ||  ||||    ||   ||||                         
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagta--accactaattc-actactattctgatattttc--tgtgtttgtgtacaatattgtgaccttgatttactttcaa--ttag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193674700|gb|FK620368.1|FK620368
EST:     GCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: GCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193552841|gb|FK505706.1|FK505706
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58017961|gb|CX704703.1|CX704703
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58020447|gb|CX707189.1|CX707189
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|37994217|gb|CF805963.1|CF805963
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|151394261|gb|EV264132.1|EV264132
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|31468281|gb|CD410309.1|CD410309
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|16105854|gb|BI893594.1|BI893594
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|31462859|gb|CD404887.1|CD404887
EST:     TGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCCAACGTCACTTAAAGCTTCCACAT
genomic: TGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|31464192|gb|CD406220.1|CD406220
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193358302|gb|FK324046.1|FK324046
EST:     CGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: CGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|13788932|gb|BG651523.1|BG651523
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGTGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193483634|gb|FK451533.1|FK451533
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|19269428|gb|BM885684.1|BM885684
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATC
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATC
EST: gi|8283787|gb|BE021346.1|BE021346
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAT                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|207834470|gb|GD807715.1|GD807715
EST:     CGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: CGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|19346443|gb|BM891323.1|BM891323
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATC
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATC
EST: gi|37997491|gb|CF809080.1|CF809080
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGNTA-TGGCTCTGTGAGATTCAATCAAACGTCA
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTG-TAATGGCTCTGAGAGATTCAATCAAACGTCA
EST: gi|58021292|gb|CX708033.1|CX708033
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|208024801|gb|GD825131.1|GD825131
EST:     AATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: AATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193363616|gb|FK330878.1|FK330878
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|57575959|gb|CX548930.1|CX548930
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|192299481|gb|FG990790.1|FG990790
EST:     TCAATGAG-ATAT-T-GAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|207680098|gb|GD663712.1|GD663712
EST:     AATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: AATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|10255799|gb|BE823565.1|BE823565
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|192295554|gb|FG988128.1|FG988128
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGAT-CAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|7146601|gb|AW508523.1|AW508523
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|151413065|gb|EV282873.1|EV282873
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|37995997|gb|CF807586.1|CF807586
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|254329999|gb|GR839552.1|GR839552
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT