1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGATGGTTCATGAATTTTCCAAGCTTGGTGCTTATTTTTCCTTCTCAGGATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATGgtgattttcatcactcctgatatatgattaatgttgaatgtaattttgtactatatatttcaaatcagtgacatgcttattttctattctatttag
species | Glycine max |
transcript | GLYMA16G26700.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATG GTCCCTCCTGATAGGATTTTGTTGGAGACAGATGCACCTGATGCACTACCAEST: gi|12772105|gb|BG237032.1|BG237032
genomic: GATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATGgtgattttca ... ttctatttagGTCCCTCCTGATAGGATTTTGTTGGAGACAGATGCACCTGATGCACTACCA
EST: GATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATG GTCCCTCCTGATAGGATTTTGTTGGAGACAGATGCACCTGATGCACTACCAEST: gi|254341607|gb|GR852744.1|GR852744
genomic: GATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATGgtgattttca ... ttctatttagGTCCCTCCTGATAGGATTTTGTTGGAGACAGATGCACCTGATGCACTACCA
EST: GATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATG GTCCCTCCTGATAGGATTTTGTTGGAGACAGATGCACCTGATGCACTACCA
genomic: GATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATGgtgattttca ... ttctatttagGTCCCTCCTGATAGGATTTTGTTGGAGACAGATGCACCTGATGCACTACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATGGTTCATGAATTTTCCAAGCTTGGTGCTTATTTTTCCTTCTCAGGATTTCTTATGTCACTAAAAGCAAGTAAAGCAAAGAAAATGCTGAAGATGgtgattttcatcactcctgatatatgattaatgttgaatgtaattttgtactatatatttcaaatcagtgacatgcttattttctattctatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG