Sequence
atgc intronic sequence ATGC exonic sequenceGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgttatttattgaccaatcatgacttttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttag
Basic information
species | Glycine max |
transcript | GLYMA16G26220.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 5
GTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtg---tgaatgttat----ttattgacc---aatca--tgacttttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttag----------------------------------
||||| | | || || || ||| | | || ||||||| ||| |||||| |||||||||||||||||| || ||| | || ||| | | || | | || | || | || | || || | | || || || ||||
GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGAAAGCAAACTGGAAGgtagattgcatgccactgagtttttggctttaagccaattctttcttgttttatttcaaaggactcagaaatgcgagggtatggtttcatcttttgttagtcaactctaattagtttgttttccttctgtatag
upper sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G12840.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgttatttattgaccaatcatgacttttaatataatacatatttcttagctgactta--aatgacctattt----gcctgtttttag----------
||||||||| | || |||||||||||||| |||| || |||||||| ||||||||||||| |||||||| ||| | || | | | || ||| | | | | | | | | ||| || || |||| | ||||||
GTTCGTGTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAGgt---aattcttttcttctcatatttat-actataagagcacactagaaactgtgggcggtttagcaacaacaaattttgaagtttgttttctcatctatctga
upper sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 5
GTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgt---------gaatgttatttattgaccaatcatgacttttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttag
||||| || | |||||||| ||| | ||||||||||| ||||| || || |||||||||| |||||||| | ||| | ||| | | ||| || || ||| || || | ||||||| |||| ||||| ||||| || ||
GTTCGCATTGCTGAGTATAATAATGTGCGCAGTCAGCTCAATGCTATTAATCGAAAGCAAAGTGGAAGgtataccttggttgaaatctgtttgtaggacaaacaagatttt--atttactgtg-atttcttttctgatc-----gacctctttgcttgcttcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7478411|gb|AW666255.1|AW666255EST: AACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAG CTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgt ... ctgtttttagCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgttatttattgaccaatcatgacttttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttag
- - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG