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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtgaaatttagtggttttaccttgttgagacactaatgtttgcatgaatattcattgatataactttcttttacag

Basic information

species Glycine max
transcript GLYMA16G26210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 5
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtgaaatttagtggttttaccttgttgagacactaatgtttgcatgaatattca-ttgatataactttcttttacag
 || |||   ||||||| ||||||||| ||||| || |||||  ||||||| ||||| ||||||||||||||||| ||  |||| | |||| | || |||||  ||||    ||| |    | || ||||      ||| | ||| |   |   |  |  | || ||  | |   || |||
TGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTATGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGgtccgtga----tagagagactgccgtgttttctttctattcttttctacatcctggagctaatgta-ttattgattgcag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 5
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtga-aatttagtggttttaccttgttgagacactaatgtttgcatgaatattca--ttgatataactttcttttacag
 || ||    ||||||| ||||||||| ||||| || |||||  | || || ||||| ||||||||||||||||| ||  |||| | |||||| || |||||  |||  |    |   |   |   ||  | |  | ||  | |||   |  ||  |     | |||||   ||  ||| |||
TGAAGAACTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTCTTCGGCATGGGTTATGTGACGAACTCTGCGATCATTCCTGCCTTGATTGGGAAGgtcagtggcagagaaactgccatgttttcataattc-ctgttctttctgtacattatggagctaatatattattgattt-cag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtgaaatttagtggttttaccttgttgag------acactaatgtttgcatgaatattc--attgatataactttctt--ttacag
 || |||  |||||||| ||||||||| ||||| || |||||  ||||||| |||||||||||||| |||||||||||  ||||||   || | || ||||| |||   || | |||    ||  |  |  |           |  | ||| |||||    |     |||    ||| |  |  || |||
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtga-aattta-----------------gtggttttaccttgttgagacactaatgtttgcatgaatattcattgatataactttcttt-tacag
 ||||| |||||| | |  ||||| || ||||| |||||| | |||||||| ||||||||||  || || || |||||  ||||||||||||| |||||||| ||      ||||                 ||   ||  |  | ||   | ||  ||| ||   |  |||||  ||  | | |  |  | | |||||
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccctttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 5
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtgaaatttagtggt---------------------tttaccttgttgaga----------cactaatgtttgcatgaatattcattga--tataactttcttttacag
|||  ||| ||| ||||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||||||  ||||  | |||||||||  | || | |  |                     || || | | | |||          |||||||  ||| |||   ||   |||   | | | ||   |||||||
GGAAAAGTATGTCGCAAATTTTGTTGGAAAACCAGCTGCTATAGTGTTTGGAATGGGCTACGTGACAAACTCTGCCATCCTTCCAGTTCTGATTAGTAAGgtttgtacagttaactaataagagcacttcataacaagggttcacgtggcttagaagctttgtgtcactaatccttgaatgtgaatgttttggcttgttatttctgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730538|gb|BM525934.1|BM525934
EST:     GTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAG                         GGAAGTTTGATTATTAGTGATTCATTGAATCACAACTCAATTGTTAATGGT
genomic: GTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtgaaa ... tcttttacagGGAAATTTGATTATTAGTGATTCATTGAACCACAACTCAATTGTTAATGGT