1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATCGACGGGCCAACCCGTATAACACAGGAGTGTTCAATAATTTCTTAGAGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttagaatttatgcaaatatcttatagtagaatatcttaggttatcctccaaatttagtttcctttcttatttccttgttatatcttaggattgg...
species | Glycine max |
transcript | GLYMA16G26140.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAGCATT-CCC-ATCAAAG-ACAATTTCAGGGCAAAG GTACCAATGGAACCAGTATTA-CTGCTCGATCGGTGGGTGGAGGCTTTATGEST: gi|254319531|gb|GR829043.1|GR829043
genomic: CCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttag ... atttcaacagGTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATG
EST: AGATATTCTGCACCAGCATTCCCCAATCAAAGAAC-ATTTCAGGGCAAAG GTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATGEST: gi|209717446|gb|BW659095.1|BW659095
genomic: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttag ... atttcaacagGTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATG
EST: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAG GTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATGEST: gi|13181613|gb|BG352953.1|BG352953
genomic: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttag ... atttcaacagGTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATG
EST: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAG GTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATGEST: gi|254320610|gb|GR827059.1|GR827059
genomic: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttag ... atttcaacagGTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATG
EST: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAG GTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATG
genomic: AGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttag ... atttcaacagGTACCAATGGAACCAGTATTACCTGCTCGATCGGTGGGTGGAGGCTTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCGACGGGCCAACCCGTATAACACAGGAGTGTTCAATAATTTCTTAGAGATATTCTGCACCAGCATTCCCCAATCAAAGAACAATTTCAGGGCAAAGgtgctgttagaatttatgcaaatatcttatagtagaatatcttaggttatcctccaaatttagtttcctttcttatttccttgttatatcttaggattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG