Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGGGAAAGgtaacaattttttatttatttttgcttatttttgtctattgttttattttgagccaatgttcatttggaattttgcattattaatcactcttttatttcacttgttag
Basic information
species | Glycine max |
transcript | GLYMA16G25990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G25990.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGGGAAAGgt--aacaattttttatttatttttgcttatttttgtctat-tgttttattttgagccaatgttcatttggaattttgcattattaatcactcttttatttcacttgttag
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AGGAGTTCAATGTGCGGGTAACCCACATTTTTGGGTTAACGAGGATGGATCGTATCAAGAAGAAGGACAGAAGAATACCAAGGGATACATATGGGGCAAGgttcgttgttttcgtattaaatctatattccattcgattgtgttttcccctttgatttaaag---attgcaaactttttgctgctttgcag--------------------
upper sequence: GLYMA16G25990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0255g00100.t01 (Vitis vinifera), 5'ss of exon 4
AGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGGGAAAGgtaacaattttttatttatttttgcttattttt-gtctattgttttattttgagccaatgttcatttggaattttgcattattaatcactcttttatttcacttgttag
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AGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGGGCAAGgtgtgatttgtatgtgaatatgcagtgattttttgttttttaacctcttacatagccattcacttttcagacctttatttatcactaagt--tctaatgcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208211378|gb|GE012215.1|GE012215EST: GGGTGTATCTGGGGAAAG GCTGGAACCAAGCTTGTACGTGCTTTACTGTCCTTGCCAGTTCCTTCTAAT
genomic: GGGTGTATCTGGGGAAAGgtaacaattt ... cacttgttagGCTGGAACCAAGCTTGTATGTGCTTTACTGTCCTTGCCAGTTCCTTCTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGGGAAAGgtaacaattttttatttatttttgcttatttttgtctattgttttattttgagccaatgttcatttggaattttgcattattaatcactcttttatttcacttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG