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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattcttctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag

Basic information

species Glycine max
transcript GLYMA16G25750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattcttctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag
 |||||||| |||||  | ||  | ||||||||||||| |  ||||||||||||||||||| | || |||||||| || |  |||||   ||| |||||||| |     |||| ||  ||  ||     ||    |            |||   ||||  |   |  |    ||   ||| ||||  ||                                                                           
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgtaactcctttgt-ttacttattaagcagttatccatgtctgcaagagtaat--gtttctatgcttatagtcaaccaatatatgactatgcag-----------------------------------------------------------------------

upper sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattcttctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag
 |||||||| || ||  | ||| | ||||||||||||| |  ||||||||| ||||||||| |||||||||| || |  |  || ||   ||| |||||||| |   | |||| ||  ||  ||   | ||| |     ||||| |  | || | |  |  ||| || | |                                                                                             
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgt-ttactttttagcagtttctt-----tcaatgtactgac-cttaaagccatgctgcag---------------------------------------------------------------------------------------------

upper sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 5
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtc--ttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattctt-ctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag
 ||||| || |||||||| ||| ||||||||||||| ||   ||||||||| |||||||| |||||| |||| ||  |    || ||||  |||||||||||     |   || | ||   |  ||  |  |  ||    || | | || | |  | || |    |||   ||    |||| ||                                                                                   
TGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGgtccctatacattttattaagtattat-tattgtatcctcctgattcttttgaagc-ttaacctgttcaagctttgttttacag-----------------------------------------------------------------------------------

upper sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 6
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattcttctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag
||||||||| |||||||||| ||||||||||||||| | |  ||||||||||||||||||| |||||| ||||||    ||||| ||   |||  |||||||   | ||  ||   | ||     || ||     |   |   | |   |     |    | || |||   | ||  | || |||   | ||  | |   |||    |  || | ||     ||| |   ||  |||  |  ||   ||||  ||| || | ||
CGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatccagttcagatt----tattct-----agttttggtctggcattggctaatgaaatgctt---ggatccaaagctga---ttttccagtaattttg--gtggttctatgg----aatgcacttgctaattttcattttttcct--ttctttgatag