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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGGgtaatttcgccaccccatggtttaatacctacgtagaaactataaagaaattgataaaaatgggaattaatagtttaattttgcatgttaaaacag

Basic information

species Glycine max
transcript GLYMA16G25490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25490.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGGgtaatttcgccaccccatggtttaatacctacgtagaaactataaaga-aattgataaaaatgggaattaatagtttaattttgcatgttaaaacag
||  ||||||||||||| |||||||| ||   |||||  || || ||||| ||||||||||| |||||||| |||||||||       |||  ||| |   ||   |    | |  | | ||| | ||    |  | |      |   | | ||  ||   ||         ||
GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgttttaccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtag

upper sequence: GLYMA16G25490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 5'ss of exon 5
GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGGgtaatttcgccaccccatggttta-atacctacgtagaaactataaag---aaattgataaaaatgggaattaatagtttaattttgcat-gttaaaacag-
||  |||||||||| ||||||||| || | | ||| | |   || ||||||||||| || |||||||||||||| ||||||| |    ||    || || | | | || |  |||||  ||||     | | ||  |    |  ||   ||       |  ||| || | |  | | | 
GTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGGgtaatgt-ataactttgtgtttaagacaacttca-agaaataataacatctacactgtgatctttttgagggaaggaagagaccttggattgatccatctgg