1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTCCTAAAGCCATTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTTTATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttacttgctatcttctcattaaagcatattggtgttatgaaaatggtaggattttttatctcaagaatcacattcatggaggcttttatatatgg...
species | Glycine max |
transcript | GLYMA16G25200.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|197666163|gb|FD480429.1|FD480429
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|213604005|gb|DB974187.1|DB974187
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: CAGGCAAAGCAACCAGCTCGGATCCTTTCAGTCCTAAAAACT GAT-TATATAAATTTTTCCAATGTGGATGACTATCTTGTGGAATCTATAACEST: gi|298173858|gb|HO017194.1|HO017194
genomic: CAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagG-TGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAAC
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|51337924|gb|CO981790.1|CO981790
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|151399533|gb|EV269404.1|EV269404
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|209728318|gb|BW658530.1|BW658530
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|151405996|gb|EV275811.1|EV275811
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAEST: gi|151405769|gb|EV275583.1|EV275583
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
EST: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGT GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
genomic: TATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttact ... gcaaatacagGTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCTAAAGCCATTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTTTATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttacttgctatcttctcattaaagcatattggtgttatgaaaatggtaggattttttatctcaagaatcacattcatggaggcttttatatatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC