Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatcctaaccagtattgtcctttacttgaag

Basic information

species Glycine max
transcript GLYMA16G25190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 3
GATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatc--ctaaccagtattgtcct--ttacttgaag---------------------------------
         ||||  || | ||| | | |  | ||||  |    ||| ||||||||||||||||| ||||||||||||||||||| || ||| ||| |    || |||| | |  |  ||  | || | |||   |   |||| ||  | | | |  || ||   | ||    |  ||  |||| |                                 
---------GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgat-tgggaagcccat-tgatagttttctgtgga--ttttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565633|gb|BE475142.1|BE475142
EST:     CTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTG                         CTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT
genomic: CTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgata ... ttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT
EST: gi|14008987|gb|BG725591.1|BG725591
EST:     CCTCAGTTTATGGTG                         CTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT
genomic: CCTCAGTTTATGGTGgtatgtgata ... ttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT