1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatggtttgattttggatgtgattgctatttttggagtaaatcacaacaatttagttgaatggaagtgtgtgtttggtttattgtttgcacgcat...
species | Glycine max |
transcript | GLYMA16G23870.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATEST: gi|193468914|gb|FK432712.1|FK432712
genomic: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGAT
EST: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATEST: gi|193558633|gb|FK516222.1|FK516222
genomic: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGAT
EST: TTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTG-AAGAGACGCAGCGGTGGTTGTAAGGCAGATEST: gi|207736879|gb|GD709496.1|GD709496
genomic: TTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGAT
EST: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGG
genomic: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatggtttgattttggatgtgattgctatttttggagtaaatcacaacaatttagttgaatggaagtgtgtgtttggtttattgtttgcacgcat
- - - - - GGTGGA
- - - - - GTGGAG
- - - - - - TGGAGA
- - - - - - GGAGAA