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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaattttccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatt----tatcatataaattttccgaaacaggtgttagcttgggctttccatgtaataat-ttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag
 |||||||||||||| ||||||||||| | ||| |||||||||||||||| |||| | ||||| || || |  || ||||||||||| | |||||| ||||||    | | || |    | |     | | || ||||||||     | | ||   | |||||    |     || | ||  || | | |  |||   |                                                                                       
GGCAAGAGAACTAAAGAAAGCAGCTGATGGACTTCATCAGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGAAAAATGTGAAAGCAGTTGAAAAGgtacctcatatatctcaaggttcagtatcttatctaaattttgtttcataagtagcaacttggaaagtttgcctattcatactggtcccttgtgtgtaaa--------------------------------------------------------------------------------------

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaattttccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag
 |||||||| ||||| ||||||||||| ||||| || ||||||||| ||| |||| | ||||| || ||||   | ||||||||||| | |||||| |||||| || |  |    |   | |||    | | | ||     |||   ||   |        | || |   |      |||| | | |||||    || || |  ||   | |  ||                                                                 
GGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACCAGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAAAGgtacaccatcatatctaagggtttggggtcttatttc----aaatctgttcca--------tgtctacaaaggtggctgatacct-ctgttgatattggttgctga---tgtgtag-----------------------------------------------------------------

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaattt----tccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag
 ||||||||  | || ||||| ||||| || || |||||||||||||||| |||||| |||||||||||||  |||||||||||||||| ||| ||||||||| |    |  | ||| | | || |  | |||| ||    ||  |  |||   | || ||||   ||  |||    || ||  ||  |    ||  ||| |  | |                                                                              
GGCAAGAGACTTGAAGAAAGCGGCTGATGCGCTCCATCAGGAAGAAAGAAGTGGTTCCAAGGGTAGAAAGTGGCGTAAAAATGTGAAGGCAGTAGAGAAGgtatattttacct-ttgattactt-ttgtctaaagttcagatcacattcagtcatcagtttgg---ttaaatgcgtaaagtt--tgtttctcattcgagtatcagtt------------------------------------------------------------------------------