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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaattttccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatt----tatcatataaattttccgaaacaggtgttagcttgggctttccatgtaataat-ttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag
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GGCAAGAGAACTAAAGAAAGCAGCTGATGGACTTCATCAGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGAAAAATGTGAAAGCAGTTGAAAAGgtacctcatatatctcaaggttcagtatcttatctaaattttgtttcataagtagcaacttggaaagtttgcctattcatactggtcccttgtgtgtaaa--------------------------------------------------------------------------------------

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaattttccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag
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GGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACCAGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAAAGgtacaccatcatatctaagggtttggggtcttatttc----aaatctgttcca--------tgtctacaaaggtggctgatacct-ctgttgatattggttgctga---tgtgtag-----------------------------------------------------------------

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAACTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGGAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaattt----tccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatttcacatatttttctag
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GGCAAGAGACTTGAAGAAAGCGGCTGATGCGCTCCATCAGGAAGAAAGAAGTGGTTCCAAGGGTAGAAAGTGGCGTAAAAATGTGAAGGCAGTAGAGAAGgtatattttacct-ttgattactt-ttgtctaaagttcagatcacattcagtcatcagtttgg---ttaaatgcgtaaagtt--tgtttctcattcgagtatcagtt------------------------------------------------------------------------------