1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGAAAGATGCTGCTTCCATGCAGAACAAATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatattcttggtgctcaatttatgtttctcttgatttttttcagcattagctcttctaatatcttgtttgctttgtgaag
species | Glycine max |
transcript | GLYMA16G18450.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATG CTTAACCGGGATACATGGGCCAATGAAGCCEST: gi|120495145|gb|EH223312.1|EH223312
genomic: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatatt ... ctttgtgaagCTTAACCGGGATACATGGGCCAATGAAGCC
EST: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATG CTTAACCGGGATACATGGGCCAATGAAEST: gi|193336500|gb|FK298988.1|FK298988
genomic: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatatt ... ctttgtgaagCTTAACCGGGATACATGGGCCAATGAA
EST: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATG CTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGEST: gi|4395750|gb|AI494747.1|AI494747
genomic: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatatt ... ctttgtgaagCTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAG
EST: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATG CTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGTACAEST: gi|193633973|gb|FK581095.1|FK581095
genomic: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatatt ... ctttgtgaagCTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGTACA
EST: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATG CTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGTACAEST: gi|193605082|gb|FK556396.1|FK556396
genomic: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatatt ... ctttgtgaagCTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGTACA
EST: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATG CTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGTACA
genomic: AATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatatt ... ctttgtgaagCTTAACCGGGATACATGGGCCAATGAAGCCGTTTCTCAGACTATTAGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAAAGATGCTGCTTCCATGCAGAACAAATGGTTGTTGGTGAACATACAATCTACCAAGGAATTCAGCTCACACATGgtattatattcttggtgctcaatttatgtttctcttgatttttttcagcattagctcttctaatatcttgtttgctttgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA