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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttataattgtgcatttgtgtttagggtttatgatgaaaatagttgggtttcacttgtattatataacatagaatgtatatactataatataa...

Basic information

species Glycine max
transcript GLYMA16G17580.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g02550.2 (Oryza sativa), 5'ss of exon 8
CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttataattgt-gcatttgtgtttag---ggtttatgatgaaaatagttgggtttcacttgtattata-taacatagaatgtatatactataatataa
|  ||||| || | ||||||  ||||||||||||||||  | || |||| |||   | ||||||| ||||||||||| ||||| || || |||||||||||||    |       |||    |||     | |   | ||| | |||        ||||  |   || |  | |  |    |  ||||     | || | |    
CCCTTTTCAGAGACTGAAGTCCGAAATTGGTGTTTTCAGATATTTCAAGCTTTGAGTCACATGCATCAGCGTGGATATTTTCACCGCGACCTTAAGCCTGgtatggctggtgggctgttatttttaaacctggcatgctttctaatgcttgagactgggagttgtttatgatgttctgttgtgcaatgcg-gcatta-agtg---

upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G864414_T02 (Zea mays), 5'ss of exon 8
CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttg--tttataattgtgcatttgtgtttagggtttatgatgaaaatagttgggtttcacttgtattatataacatagaatg-tatatactataatataa
|  ||||| || | |||| |  |||| ||||| |||||| | || |||| | |   | ||||||||||||||||||| ||||| ||||| |||||||||||||  ||  |||  | |||| | ||| |   |     ||   |||    |  |      |  ||||| |  |   | | |   |  ||  | |  |  | |  
CCCTTTTCAGAGACTGAAATCCGAAACTGGTGCTTTCAAATATTTCAAGCTCTGAGTCACATGCACCAGCGTGGATATTTTCACCGTGACCTTAAGCCTGgtatgtggttttgcatttgttcttttttacattcatgttgcaatggt--tgatctatcctttcttgtttgttgcgaaacaagttactagttccagtcgtttt-

upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 5
CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttataattgtgcatttgtgtttagggtt-tatgatgaaaatagttgggttt-cacttgtattatataacatagaatgtatatactataatataa-
|| ||||| |||| ||||||| |||||||||| |||||||| ||||||||| | ||||||||||||  ||||||||| |||||||| || || ||||| |||   || | |   ||||| |||| ||   |   |  ||  |    | |  ||| |    ||||   |||  |    |    ||| ||  | |     ||   
CTTTTTTCGGAAACTGAAGTTCGAAATTGGTGCTTTCAAGTGTTCCAAGGTCTTGCTTACATGCACAGGCGTGGATATTTTCATCGCGACCTCAAGCCAGgtgactgct-acttttgtg-atttttgaccaaaatcatagaaatgcattttttgagcaagcactacaattccaatttagttgatg-attcatttagggatgga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690052|gb|BG156388.1|BG156388
EST:     TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTG                         AAAACTTGCTGGTCACCAAGGGTGTCATCAAGATTGCTGATTTTGGCCTAG
genomic: TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgttt ... tgttttgcagAAAACTTGCTGGTCACCAAGGGTGTCATCAAGATTGCTGATTTTGGCCTAG