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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTTCCCGTAGGGACACTCGATTAGGTTCATCTAAGAAAATGGATACATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtctactaatcaatatatgttttttgactgtttgtcttcatgaaccattccctaagaatgttgttggctattccag

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346702|gb|BI972297.1|BI972297
EST:     ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG                         ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: gi|6567013|gb|AW234640.1|AW234640
EST:     ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG                         ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: gi|21675217|gb|BQ627568.1|BQ627568
EST:     ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG                         ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: gi|298194576|gb|HO043048.1|HO043048
EST:     ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG                         ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: gi|9205120|gb|BE331344.1|BE331344
EST:     TCACTTTCCTTTTCTGGGTTTTTCAGTAACGAG-AAAAAGTTCAATCCAG                         ATGTCTATGATTGGAGCAGAATCAATGTTAAGTATTGTGATGGGTCATCA
genomic: TCACTTTCCTTTTCTGGGTTTTTCAGTAAC-AGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCA
EST: gi|19935349|gb|BQ080379.1|BQ080379
EST:     ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG                         ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG                         ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT