1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttgcaaaattcaaaggaatttgaaattaagttacaaggaaaatattaagcatttgtaaattttatttttccaattttctttctaatgagatttgtataatgtgatgtatatatatcag
species | Glycine max |
transcript | GLYMA16G17150.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6070525|gb|AW099912.1|AW099912
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|9986447|gb|BE660555.1|BE660555
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGNGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACANCCAATTTGCACTTCANAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6455064|gb|AW185747.1|AW185747
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATGTGCACTTCAGAAGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|298173936|gb|HO017272.1|HO017272
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|7590021|gb|AW705783.1|AW705783
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|9986449|gb|BE660557.1|BE660557
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|5770415|gb|AI973589.1|AI973589
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|9986446|gb|BE660554.1|BE660554
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCANAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|192301230|gb|FG990180.1|FG990180
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6455714|gb|AW186397.1|AW186397
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|163921421|gb|EH038959.1|EH038959
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATCTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|151395749|gb|EV265626.1|EV265626
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|298199322|gb|HO042685.1|HO042685
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAG ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6341667|gb|AW164491.1|AW164491
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGTAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTGTTTCAGCTGTAATGCAAEST: gi|7589352|gb|AW705128.1|AW705128
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGATTACTGGTGATGTGGAAGAAGTTGATCAG ACAACCAATTTGCACTTCAGAAGAGCAAGGATTTTCTCAGCTGTAATGGAAEST: gi|9986448|gb|BE660556.1|BE660556
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAACAAGGATTTTTTCAGCTGTNATGGAAEST: gi|9986450|gb|BE660558.1|BE660558
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAACAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6668142|gb|AW279593.1|AW279593
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|5753593|gb|AI960880.1|AI960880
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|298163578|gb|HO012311.1|HO012311
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|7589167|gb|AW704947.1|AW704947
genomic: GGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAAGT-GATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAEST: gi|6070716|gb|AW100103.1|AW100103
genomic: GTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAA-GTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATNTGCACTTCAGAGGAGCAAGGATNNTTTCAGCTGTAATGGAAEST: gi|9986445|gb|BE660553.1|BE660553
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6341492|gb|AW164316.1|AW164316
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|6724637|gb|AW309092.1|AW309092
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAEST: gi|5753417|gb|AI960704.1|AI960704
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttgcaaaattcaaaggaatttgaaattaagttacaaggaaaatattaagcatttgtaaattttatttttccaattttctttctaatgagatttgtataatgtgatgtatatatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT