Sequence
atgc intronic sequence ATGC exonic sequenceCATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattctttgtagataatgctctcttatggatattatattgttattaatcatcacaatttagaattcatttactaatatttgcatatttttatgaatttatttag
Basic information
species | Glycine max |
transcript | GLYMA16G15810.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G15810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 5
CATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattctttgtagataatgctctcttatggatattatattgttattaatcatcacaatttagaattcatttactaatat-ttgcatatttttatgaatttatttag
||||| ||||| || ||||| || || |||||||| |||||| | |||||||| | |||||||| ||||||||||| || | ||||||||| | || || | || |||| || | || | | ||| | | ||| || || | | | |
CATATGATGCCGCCTTATGGAACACCGCCTCATCCGTATGTTACGATGTATCCTCCAGGTGGCATGTATGCTCATCCTTCATTACCTCCGgtactgtt-acagtttggatgttc-------agttatgttactcaaaaaagtgaatgtttttgtagtttctgttaacatgttccgtgctgcaacag----------
upper sequence: GLYMA16G15810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 5'ss of exon 5
CATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattctttgtagataatgctctcttatggatattatattgttattaatcatcacaatttagaattcatttactaatatttgcatatttttatgaatttatttag
||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||| |||||||| || || ||||| || || ||||||||| | | || | || || | | || ||||| | | | |||| | |||||| | | | | ||| |
CATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATGTATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGgtactgccaactg-tagtagattcaattgcagtgaacataa--attaa--aatgtagctgttaattatatctttaatatgttccattctgtatcag---------
upper sequence: GLYMA16G15810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
CATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattct-ttgtagataatgctctc-ttatggatattatattgttattaatca-tcacaatttagaattcatttactaatatttgcatatttttatgaatttatttag
||| | |||||||| ||||| || ||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| | || | || ||||| | || | ||| ||||||| || | | | | | | | | | |||| || || |||||| || |
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7796494|gb|AW781891.1|AW781891EST: TTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCG GGATCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCA
genomic: TTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattctttg ... atttatttagGGATCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattctttgtagataatgctctcttatggatattatattgttattaatcatcacaatttagaattcatttactaatatttgcatatttttatgaatttatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG