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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaatcatgttgttccattcaatcttcacaaccattttattctgcataccatatttacaagatgaagctcgatatagcttgttgtggtcttcca...

Basic information

species Glycine max
transcript GLYMA16G10880.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491370|gb|EH219537.1|EH219537
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|13562679|gb|BG550899.1|BG550899
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|22522877|gb|BU081688.1|BU081688
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|20812913|gb|BQ297391.1|BQ297391
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|7028945|gb|AW458728.1|AW458728
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120495789|gb|EH223956.1|EH223956
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|12689187|gb|BG155523.1|BG155523
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGGAGCACGGGAA-GACAT
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA-GGGAAAGACAT
EST: gi|120529139|gb|EH257273.1|EH257273
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120531755|gb|EH259888.1|EH259888
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|10844582|gb|BF067838.1|BF067838
EST:     CCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|10844694|gb|BF070942.1|BF070942
EST:     GCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: GCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|6914782|gb|AW396312.1|AW396312
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|22523177|gb|BU081988.1|BU081988
EST:     GCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: GCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|6134837|gb|AW133230.1|AW133230
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCATGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|9205303|gb|BE331527.1|BE331527
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCANGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|20813349|gb|BQ297827.1|BQ297827
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA