1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGATACATCTCAAATTTCAAAGCATTACTTGAAGTCTTATTTGATTGGAATTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAGgttccttctctttacctttgtctacttctttatttttttagctattaattaagagaccatgaaatatctaaaggaaacttcaacagttacattcttttag...
species | Glycine max |
transcript | GLYMA16G10020.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGTTACCAAGAATACTTNNNNTNNTCTCAGTGATAGCATATCAGAG AGATTGGAAACCAGTGAGTCTTGTGATGTTTCTNNCNNNGGTGACAACGATEST: gi|254337842|gb|GR849581.1|GR849581
genomic: TGGAAGTTACCAAGAATACTT-CAATACTCTCAGTGATAGCATATCAGAGgttccttctc ... catgctacagAGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAGGTGACAACGAT
EST: TTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAG AGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAGGTGACAACGATEST: gi|254337841|gb|GR849580.1|GR849580
genomic: TTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAGgttccttctc ... catgctacagAGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAGGTGACAACGAT
EST: TTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAG AGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAGGTGACAACGATEST: gi|7924289|gb|AW830315.1|AW830315
genomic: TTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAGgttccttctc ... catgctacagAGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAGGTGACAACGAT
EST: TTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAG AGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAAGTGACAACGAT
genomic: TTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAGgttccttctc ... catgctacagAGATTGGAAACCAGTGAGTCTTGTGATGTTTCTCTCCCAGGTGACAACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATACATCTCAAATTTCAAAGCATTACTTGAAGTCTTATTTGATTGGAATTGGAAGTTACCAAGAATACTTCAATACTCTCAGTGATAGCATATCAGAGgttccttctctttacctttgtctacttctttatttttttagctattaattaagagaccatgaaatatctaaaggaaacttcaacagttacattcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa