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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttgaagatctcacctctttctgctacttatccccccaacatagatgcttatctgtttctttgtatctgtag

Basic information

species Glycine max
transcript GLYMA16G09230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttgaagatctcacctctttctgctacttatccccccaacatagatgcttatctgtttctttgtatctgtag
||| |||||||| || |||||||| |||||  | ||||| || || |||||||||||||| |||||||| ||||||||||    | ||  | | |      |||  |  |  | | |  |   | |||   |||||| |  ||   || || ||
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtatcatataaaactgttaaaggcatctatttttccttcgcttattgt-gatcaatatctgatgatt---atttgcag

upper sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttgaagatctc-----acctctttctgctacttatccc-cccaacatagatgcttatctgtttctttgtatctgtag
||| |||||||||||||||||||| |||||  | ||||| || || |||||||| || ||||||||||||||||||||||   ||||||   ||       |||| | | || ||  |  |     ||||   |  | ||  ||   |||||        
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12497295|gb|BG047495.1|BG047495
EST:     AGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAG                         AAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCA
genomic: AGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttg ... gtatctgtagAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCA
EST: gi|7685725|gb|AW756373.1|AW756373
EST:     AGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAG                         AAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCA
genomic: AGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttg ... gtatctgtagAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCA