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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttatcattgtgcaattgtgtttagggtttatgatgaaataatcgggtttcacttatattatatagcatggaatgtatatactatataatata...

Basic information

species Glycine max
transcript GLYMA16G08080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g02550.2 (Oryza sativa), 5'ss of exon 8
CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttatcattgtgcaattgtgtttagggtttatgatgaaataatcgggtttc--acttatattatatagcatggaatgtatatactatataatata
|  ||||| || | ||||||  ||||||||||||||||  | || |||| |||   | ||||||| ||||||||||| ||||| || || ||||||||||||| | | |  |        | || |      ||  |    |  |||  | | |  |   | || | |   ||    ||   || | || |   || |  | 
CCCTTTTCAGAGACTGAAGTCCGAAATTGGTGTTTTCAGATATTTCAAGCTTTGAGTCACATGCATCAGCGTGGATATTTTCACCGCGACCTTAAGCCTGgta-tggctggtgggctgttatttttaaacctggcatgctttctaatgcttgagactgggagttgtttatgatgttctgttgtgca-atgcggcattaagtg

upper sequence: GLYMA16G08080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G864414_T02 (Zea mays), 5'ss of exon 8
CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttatcattgtgcaattgtgtttagggtttatgatgaaataatcgggtttcacttatattatatagcatggaatgtatatactatataatata-----
|  ||||| || | |||| |  |||| ||||| |||||| | || |||| | |   | ||||||||||||||||||| ||||| ||||| |||||||||||||  || || |   | ||   || | |||    || ||| || |||  | |   |   ||| | || | |     | ||    | |||||  |    |      
CCCTTTTCAGAGACTGAAATCCGAAACTGGTGCTTTCAAATATTTCAAGCTCTGAGTCACATGCACCAGCGTGGATATTTTCACCGTGACCTTAAGCCTGgtatgtggttttgcatttg---ttcttttttacattcatgttgcaatggttgatctatcctt-tcttgtttgttgcgaaacaagt-tactagttccagtcgtttt

upper sequence: GLYMA16G08080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 5
CTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgtttatcattgtgcaattgtgtttagggt--ttatgatgaaataatcgggttt-cacttatattatatagcatggaatgtatatactatataatata
|| ||||| |||| ||||||| |||||||||| |||||||| ||||||||| | ||||||||||||  ||||||||| |||||||| || || ||||| |||   || | |   ||||| | || ||   |   |  |    ||| | |  | | |    ||||   |||  |    |    ||| ||  | |     ||  |
CTTTTTTCGGAAACTGAAGTTCGAAATTGGTGCTTTCAAGTGTTCCAAGGTCTTGCTTACATGCACAGGCGTGGATATTTTCATCGCGACCTCAAGCCAGgtgactgct-acttttgtg-atttttgaccaaaatcatagaaatgcattttttgagcaagcactacaattccaatttagttgatg-attcatttagggatgga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264634|gb|GE063954.1|GE063954
EST:     CTTTCATCGTGATCTTAAGCCTG                         AAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
genomic: CTTTCATCGTGATCTTAAGCCTGgtacttgttt ... tgttttgcagAAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
EST: gi|10237923|gb|BE806811.1|BE806811
EST:     TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTG                         AAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
genomic: TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgttt ... tgttttgcagAAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
EST: gi|207734913|gb|GD712514.1|GD712514
EST:     TTTAGCTTACATGCGCCAGCGTGGATACTTTCATCGTGATCTTAAGCCTG                         AAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
genomic: TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgttt ... tgttttgcagAAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
EST: gi|10237927|gb|BE806815.1|BE806815
EST:     TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTG                         AAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
genomic: TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgttt ... tgttttgcagAAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
EST: gi|207718281|gb|GD699195.1|GD699195
EST:     TTTAGCTTACATGCGCCAGCGTGGATACTTTCATCGTGATCTTAAGCCTG                         AAAACTTGCTGG-CACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG
genomic: TTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTTAAGCCTGgtacttgttt ... tgttttgcagAAAACTTGCTGGTCACCAAAGATGTCATCAAGATTGCTGATTTTGGCCTAG