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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactgtttttaaaacttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag

Basic information

species Glycine max
transcript GLYMA16G07970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactgtttttaaaacttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag
|| |||||| | ||||||||||||||||| ||||| ||||||||| | || || |  || || ||||| || || |||||||||||| |  |||| |||||||||||     || ||   ||| ||  ||     |||||||     || | || |  || ||  |         | ||  | ||     ||||      |||| |                                                      
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagtatctgattgaa---ttcggtatacattttatttttg-----tggggatctcgatatgaata--------taaatgatgtgtgttttgtgttctgaatgcag-----------------------------------------------------

upper sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagta-ctgtttttaaaacttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag
|||||||||||||||||||| ||||| || ||||||||||||||| | || || |  || || || |  || || ||||||||||||||| |||| |||||||||||  || ||| |  || |      | |  |  || ||  ||     |  |    |  ||| | | |   |||       ||  || || |     ||||   |    |                                                
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcacctaaacagagtttctcttatt-tatgtaagggcttccaacatgctttaatacgtctcctgctggtctaa-ttatgaacttaatttgtctgcag-----------------------------------------------

upper sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27820.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactgtttttaaaacttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag
|| ||||| || || ||||| || || || ||||||||||| || |||||||||||||| ||||| ||||| || ||||| ||||| ||||  || ||||||||||    | | |  |   |   | |||| ||   |     | || |  | ||| | || || |||  | ||       |  |||   |   ||                                                                
GCGGTTGTTATCGGCGGTGGCTATATCGGTATGGAGTGTGCTGCATCTTTAGTGATCAACAAAATCAATGTGACGATGGTTTTCCCAGAGGCTCACTGCAgtaagt----tctctcgattattactaaacttacgtgtacgagagaaaggttgtgtat-ttagcttgaccttttt------agtttcttatgacag----------------------------------------------------------------

upper sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0014g05380.t01 (Vitis vinifera), 5'ss of exon 4
-------------------------------GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactgtttttaaa-acttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag
                               |||||| | ||||| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||| || | ||||||||||||| |||||| | ||  | | || |    ||  |   |||| |  |  |   ||   | |     || |                                                                                          
TGATGTCATGCAATCTTGTACTGGTGGGAATGCTGTTCTGATTGGCGGTGGGTACATAGGCATGGAGTGTGCTGCATCTTTGGTGATAAATAAAATAAATgttacaatggtcttcccagaaggacattgcagtaagcactgttctaaattattaccttcttttcctagcatttgaaagacaaaattgg--aatccaaggaat------------------------------------------------------------------------------------------

upper sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0066g01100.t01 (Vitis vinifera), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactgtttttaaa-acttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagtta---ttctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag
|||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||| || | ||||||||||||| |||||| | ||  | | || |    ||  |   |||| |  |  |  ||    ||    |  | ||    | ||  | |||    || |  ||                                                                 
GCTGTTGTGATTGGCGGTGGGTACATAGGCATGGAGTGTGCTGCATCTTTGGTGATAAATAAAATAAATGTTACAATGGTCTTCCCAGAAGCACATTGCAgtaagcactgttctaaattattaccttcttttcctagcatttgaaagacaaa-attggaatccaaggaatttggagtgcttcagaaatgaaaattgataat---------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718987|gb|BW657906.1|BW657906
EST:     AGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCA                         TGGCTCGTTTATTTACCTCACAGATTGCAAACTACTATGAAAAATATTATA
genomic: AGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactg ... tattttacagTGGCTCGTTTATTTACCTCAAAGATTGCAAACTACTATGAAGAATATTATA
EST: gi|18730299|gb|BM525801.1|BM525801
EST:     AGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCA                         TGGCTCGTTTATTTACCTCAAAGATTGCAAACTACTATGAAGAATATTATA
genomic: AGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactg ... tattttacagTGGCTCGTTTATTTACCTCAAAGATTGCAAACTACTATGAAGAATATTATA