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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatttttttctattttaattatgtctttttttttttcatttagatggttattgacatatcattttcttaaactaaaatttcttagcagaaacta...

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|254347046|gb|GR856716.1|GR856716
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|254327243|gb|GR836852.1|GR836852
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|192306920|gb|FG999953.1|FG999953
EST:     ACACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACGGATGGCTTCAGCATCGGTAAC
genomic: ACACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|254327242|gb|GR836851.1|GR836851
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAATAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|192306919|gb|FG999952.1|FG999952
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACGGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|7327013|gb|AW620811.1|AW620811
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTGCTGAGAAAGAGTACTGATGGCTTCAGCATCGGTTAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
EST: gi|192313596|gb|FK005592.1|FK005592
EST:     CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG                         GCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC
genomic: CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAGgttgggaatt ... atgaatgtagGCAGTCATGAACTTCCTGAGAAAAAGTACTGATGGCTTCAGCATCGGTAAC