1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaatacattggtgaatttaatcacacaataatctttaggggggaaaataaattcttaactgttaattttcttgcttaatttttcag
species | Glycine max |
transcript | GLYMA16G06750.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTT CTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATGEST: gi|151401345|gb|EV271159.1|EV271159
genomic: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaa ... aatttttcagCTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATG
EST: TCTCCTAGGANNNNNNNGGAGGATTTGCTTTTGCACCAACAACATACTTT CTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATGEST: gi|23731396|gb|BU763816.1|BU763816
genomic: TCTCCTAGGA-TTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaa ... aatttttcagCTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATG
EST: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTT CTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATGEST: gi|254330083|gb|GR839636.1|GR839636
genomic: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaa ... aatttttcagCTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATG
EST: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTT CTCCC-TGCGTCATGTGGCTTGCGATCTACAAACCAAEST: gi|254343289|gb|GR856993.1|GR856993
genomic: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaa ... aatttttcagCTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAA
EST: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTT CTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATGEST: gi|254314207|gb|GR831836.1|GR831836
genomic: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaa ... aatttttcagCTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATG
EST: GTCT-CTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTT CT-CCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATG
genomic: GTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaa ... aatttttcagCTCCCCTGCGTCATGTGGCTTGCGATCTACAAACCAAGGAGATTCAGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagccaaatacattggtgaatttaatcacacaataatctttaggggggaaaataaattcttaactgttaattttcttgcttaatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT