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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata...

Basic information

species Glycine max
transcript GLYMA16G06700.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g70960.1 (Oryza sativa), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactga---tggaaaatgctaggccaccaata
||| | |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||     |||     || ||   |  |    ||  | | |     || || ||    |         ||  ||||   |   |  || |||      |   
GCCAGGCACAATGGCCAGAACTATGTTTTTGCTCTTCTCACTGGTTATCGTGATCCACCTGCTGGTGTTTCGgtaaccctctctcatacatattgttttgttattttagtgttggtcgctacttgtaggtttcacatatgattctctgagtatctgatttgttagatttgta---

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttct-tatcttaagtcttctactttatttagtaa--agtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata
||  | |||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||||  |||||||     | ||| |   |||   |||   | || |  |||    | |   | | |  ||    || | ||   | |   | |||   | |   |   | 
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttataccttaggcatt-tgcagttgctacttgctatgtgtatcgcccttaattcctttacaaacaata--aagatgctcttg

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G032367_T04 (Zea mays), 5'ss of exon 4
----------------------------GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata----
                            ||  | ||||||||||||||||||||||| || ||||| ||||| || ||||| |||||||||||||||  ||||    |||   |  | | || | ||||  | | |  |  ||     | ||   |    ||| | |  | |  |  | |   ||    ||  |  | ||    
GCTTACTGTTTGCATTGCATTCATCCAGGCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta----ctttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata----
||  | ||||||||||||||||||||||| || ||||| ||||| || ||||| |||||||||||||||  ||||    |||   |  | | || | ||||  | | |  |  ||     | ||   |    ||| | |  | |  |  | |   ||    ||  |  | ||    
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta----ctttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaag-tcttctactttat---ttagtaaagtaattttatacatt-ttgctcagttgactgatggaaaatgctaggccaccaata
||  | ||||||||||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||  ||||  |  || ||| || | | ||  |  | | ||||||   |   | | ||  | |     ||  ||| | |    |  |     | |  ||    | |     
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattgtttcaatctggtgtgctttatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc-----

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata
|| |||||||||||||  |||||||| ||||| |||||||||||||| ||||| || ||||||||  | ||||||| ||    | ||| || ||     ||  ||||  |  | |  |  | |  |     || ||   | |   | ||||  || ||    |         
GCACGTCACAATGGTCCAAACTATGTCTTTGCGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGgtaagtt----tctctcattttccacattgaacttcttcgaattcaa-agtgctg---gttatgaaaaat---ccgatgataactgtacag---------

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 5'ss of exon 4
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttct----ttcttatcttaagtcttctactttatttagtaaagtaatttta---tacattttgctcagttgactgatggaaaatgctaggccaccaata
|| ||||||||||| || || ||||| ||||| ||  |||||||||||||||| || ||||||||  ||||||||||||  |||    || ||   |||    |  || |  |  |  | || |  ||  |   || |  |    | || |||| | ||  |  |              
GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGgtaaatttctctcctatttttgctttagacttgttattacaact--tcaaattgttggaagttagaaataatcctgt-gactaacgggtacag--------------

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttctt----atcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata
|| || ||||||||||| |||||||| ||||| || || |||||||| ||||| |||||||||||  ||||||||||||||||||   |    || |||  | |  |  || |||| || |   |   ||  | | ||| || | |  |||  |  | |   | |         | 
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagactt-cataattttctta-taaact--ttaacatcacgactttgtatttt

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 4
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactt-tatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccac-caata----
||||| |||||||||||||| ||||| ||||| ||| | |||||||| ||||| || || ||||||||||| |||| |||||      ||||| |  |  | ||     || || || |  |    ||   | |    || |        ||  | ||  |  |  |    ||     
GCCCGCCACAATGGTCAGAATTATGTATTTGCTCTTTTAACTGGTTACCGTGATCCTCCAGCTGGTGTTTCAgtaagttctt------tatctcagattatatataaacatgtaatagaacatacctaggtactgaaatctgagtttatctgccatattttcagttatgtgatgatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330992|gb|GR842257.1|GR842257
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|192326638|gb|FK018855.1|FK018855
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|192306424|gb|FG997164.1|FG997164
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCA-TTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|254314652|gb|GR829645.1|GR829645
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|151408312|gb|EV278120.1|EV278120
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|151401029|gb|EV270843.1|EV270843
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATA-GAGAGGGACTTCATTATAATC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATC
EST: gi|151408267|gb|EV278075.1|EV278075
EST:     TGTTTTTGCCCTTCTGACTGGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTT
genomic: TGTTTTTGCCCTTCTGACTGG-TTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTT