Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata...

Basic information

species Glycine max
transcript GLYMA16G06700.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g70960.1 (Oryza sativa), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactga---tggaaaatgctaggccaccaata
||| | |||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| || || | | || | | | || || || | || |||| | | || ||| |
GCCAGGCACAATGGCCAGAACTATGTTTTTGCTCTTCTCACTGGTTATCGTGATCCACCTGCTGGTGTTTCGgtaaccctctctcatacatattgttttgttattttagtgttggtcgctacttgtaggtttcacatatgattctctgagtatctgatttgttagatttgta---

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttct-tatcttaagtcttctactttatttagtaa--agtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata
|| | |||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||||||| |||||| ||||||| | ||| | ||| ||| | || | ||| | | | | | || || | || | | | ||| | | | |
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttataccttaggcatt-tgcagttgctacttgctatgtgtatcgcccttaattcctttacaaacaata--aagatgctcttg

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G032367_T04 (Zea mays), 5'ss of exon 4
----------------------------GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata----
|| | ||||||||||||||||||||||| || ||||| ||||| || ||||| ||||||||||||||| |||| ||| | | | || | |||| | | | | || | || | ||| | | | | | | | || || | | ||
GCTTACTGTTTGCATTGCATTCATCCAGGCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta----ctttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata----
|| | ||||||||||||||||||||||| || ||||| ||||| || ||||| ||||||||||||||| |||| ||| | | | || | |||| | | | | || | || | ||| | | | | | | | || || | | ||
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta----ctttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaag-tcttctactttat---ttagtaaagtaattttatacatt-ttgctcagttgactgatggaaaatgctaggccaccaata
|| | ||||||||||||||||||||||| || ||||| ||||| |||| ||| ||||||||||||||| |||| | || ||| || | | || | | | |||||| | | | || | | || ||| | | | | | | || | |
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattgtttcaatctggtgtgctttatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc-----

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata
|| ||||||||||||| |||||||| ||||| |||||||||||||| ||||| || |||||||| | ||||||| || | ||| || || || |||| | | | | | | | || || | | | |||| || || |
GCACGTCACAATGGTCCAAACTATGTCTTTGCGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGgtaagtt----tctctcattttccacattgaacttcttcgaattcaa-agtgctg---gttatgaaaaat---ccgatgataactgtacag---------

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 5'ss of exon 4
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttct----ttcttatcttaagtcttctactttatttagtaaagtaatttta---tacattttgctcagttgactgatggaaaatgctaggccaccaata
|| ||||||||||| || || ||||| ||||| || |||||||||||||||| || |||||||| |||||||||||| ||| || || ||| | || | | | | || | || | || | | | || |||| | || | |
GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGgtaaatttctctcctatttttgctttagacttgttattacaact--tcaaattgttggaagttagaaataatcctgt-gactaacgggtacag--------------

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttctt----atcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata
|| || ||||||||||| |||||||| ||||| || || |||||||| ||||| ||||||||||| |||||||||||||||||| | || ||| | | | || |||| || | | || | | ||| || | | ||| | | | | | |
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagactt-cataattttctta-taaact--ttaacatcacgactttgtatttt

upper sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 4
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactt-tatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccac-caata----
||||| |||||||||||||| ||||| ||||| ||| | |||||||| ||||| || || ||||||||||| |||| ||||| ||||| | | | || || || || | | || | | || | || | || | | | ||
GCCCGCCACAATGGTCAGAATTATGTATTTGCTCTTTTAACTGGTTACCGTGATCCTCCAGCTGGTGTTTCAgtaagttctt------tatctcagattatatataaacatgtaatagaacatacctaggtactgaaatctgagtttatctgccatattttcagttatgtgatgatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330992|gb|GR842257.1|GR842257
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|192326638|gb|FK018855.1|FK018855
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|192306424|gb|FG997164.1|FG997164
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCA-TTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|254314652|gb|GR829645.1|GR829645
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|151408312|gb|EV278120.1|EV278120
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCC
EST: gi|151401029|gb|EV270843.1|EV270843
EST:     ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATA-GAGAGGGACTTCATTATAATC
genomic: ATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATC
EST: gi|151408267|gb|EV278075.1|EV278075
EST:     TGTTTTTGCCCTTCTGACTGGGTTATCGTGACCCACCTGCTGGTGTTTCG                         ATAAGAGAGGGACTTCATTATAATCCTTACTT
genomic: TGTTTTTGCCCTTCTGACTGG-TTATCGTGACCCACCTGCTGGTGTTTCGgtaaattctt ... aataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTT