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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaaggaatgttgctatttttttaaactaaaaagaatcatttcatgacattgatttgtcaccgttggtttctgtctttgatggagtggaatttgttattgttattggatatattgcag

Basic information

species Glycine max
transcript GLYMA16G06100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaaggaatgttgctatttttttaaactaaaaagaatcatttcatgacattgatttgt-caccgttggtttctgt--ctttgatggagtgg----aatttgttattgttattggatatattgcag
  | || |||||||||||| | |||||||| ||| ||||||| |||||  |||| ||||| ||||| |||||||||||||||||||| ||  |  | |||||||| |||  | || |||||  | |  ||     |   |      || |  ||  | | | ||   |||  ||      |    |||  |       || |    | | | ||   | || || |||
CATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCTCCATAGCTGAGgtatgtaggt-tattactattactgtgcac-----atggtttgactataatgttactatatgcagtattgaattgcacaacaaaaatgtggccatgcaaactgagcaatatcatcttaaat-ttacag

upper sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G033117_T01 (Zea mays), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaaggaatgttgctatttttttaaactaaaaagaatcatttcatgacattgatttgtcaccgttggtttctgtctttgatggagtggaatttgttattgttattggatatattgcag--------------------------------------
  | |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||  |  | |||||||       |||   |||      ||  ||    |  |    |       | |||||| | | |   |||| ||| ||   |   ||   || |  ||  ||| |||   | || |                                         
CATTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatgctgtcattatagaag-aagttatggggggtagagtttgtttgtagatttggcccaggctgttt-tgttttctctat-gtttcatctcataaagttgttgtccagatggtcatgtgaaccagttctcacgcacggaatttaaatctgcag

upper sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G011923_T01 (Zea mays), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatg-aaggaatgttgctatttttttaaactaaaaagaatcatttcatgacattgatttgtcaccgttggtttctgtctttgatggagtggaatttgttattgttattggatatattgcag
 || |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||| || ||||| ||  |  | |||||||  |   |   |  | | | |  |   |  | | |||| ||   |||| |                 | | |  | | | ||| |      |   ||| ||| | |    | | |    
CGTTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCACTATGATGGCCCAAAGTTTCGCCTCGAGCTCTCCATCGCGGAGgtatatatatagcatatccagtctgctgtgc--acatgaattatacaatgaaa-----------------gctcccttgtgtaatgcaact---tccattagtgtcactatgcacactatgt

upper sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27090.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaaggaatgttgctatttttttaaacta--aaaagaatcatttcatga-cattgatttgtcaccgttggtttctgtctttgatggagtggaatttgttattgttattggatatattgcag
 || |||||  ||||||| || |||||||| || || |||||||||||| | || || |||||||| ||||| || || |||||||| || ||||| |||||  |     || |  |  ||| |  |    |  || |  || |||   ||| |    | |  ||    |||  |    || |      | ||||| |||                        
AGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTTCAGGCCAGTACTTCACCACTATGATGGTCCAAAATTCCGCCTTGAGCTCTCTGTTCCTGAGgtgcgtgtccatat-acgttttgtgaatgtcagtaataagataattaagtgaacggaaaataatctgtattgtgtgtcatcatgtgaaaattggaacttgg-----------------------

upper sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaaggaatgttgctatttttt------taaactaaaaaga----atcatttcatgacattgatttgtcaccgttggtttctgtctttg-atgga---gtggaatttgttattgttattggatatattgcag------------------------------
||| ||||| || |||||||||||||| |||||| |||| ||||| ||  ||||||| |||||||| || ||||| || |||||||| |||||||||||||||   | |  |     ||   |||       ||| |     |     | | |||| |    ||   || |    |    | | | | | |  ||  |    |  |   |  | || ||||||  | ||||                                  
TGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTAGGCCTGTCCTGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagtgtcccaataagatttggtgtacaaatttttggggttgtaccttttctttttctttgcttatagttgaatatatatatatatatatatatacattaagcctagtgtttttattgtttgtatttattttgaactgagttttgttggtgattctgcag

upper sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S168_104V6.2 (Physcomitrella patens), 5'ss of exon 5
TGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaaggaatgttgctatttttttaaactaaaaagaatcatttcatgacattgatttgtcaccgttggtttctgtctttgatggagtggaatttgttattgttattggatatattgcag
| |  | ||||  || ||| | || ||||| || || |||||||||||  ||||||| ||||||||||| ||||| |||||| |||| || ||||||||||||| |        |  |    | |||||| | ||     |  ||| |    |    | |  | | |  |          |||| |||| |||    ||  || || |   |||       
TATTCGAAAGCAGTGTAAGCCTTTAGAAGAGGACTCATTCAGGCCAGTGCTGCATCACTATGATGGGCCCAAGTTCCGTCTTCAGCTCTCTGTTCCAGAGgtatca--------tatttaactcttaaac-acaaccgtccgcttcgt----tcagctcggtatcttgtgcaaagagtaatgattgagttgaaa--atttatgatagtcagtatc------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24206077|gb|BU965330.1|BU965330
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|31459048|gb|CD401076.1|CD401076
EST:     GGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTTTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|298190302|gb|HO032423.1|HO032423
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|14011483|gb|BG726405.1|BG726405
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|6501903|gb|AW203276.1|AW203276
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
EST: gi|254341084|gb|GR854812.1|GR854812
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|4282613|gb|AI440553.1|AI440553
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254320127|gb|GR831043.1|GR831043
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192307583|gb|FG999622.1|FG999622
EST:     TGCATCATTATGATGGGCCAAAGTTTTGTCTTGAGCTGTCAGTTCCAGAG                         ACTTTGGATTTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|14259281|gb|BG882189.1|BG882189
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|13563366|gb|BG551595.1|BG551595
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|15000111|gb|BI320925.1|BI320925
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
EST: gi|192320601|gb|FK012011.1|FK012011
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTCCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|31307475|gb|CD392678.1|CD392678
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|16996018|gb|BM085390.1|BM085390
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254336107|gb|GR841432.1|GR841432
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192310236|gb|FK001934.1|FK001934
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCTGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254336108|gb|GR841433.1|GR841433
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|22522815|gb|BU081626.1|BU081626
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|22522894|gb|BU081705.1|BU081705
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|9820747|gb|BE556257.1|BE556257
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7232661|gb|AW568015.1|AW568015
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATA
EST: gi|19348683|gb|BM893215.1|BM893215
EST:     TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|4396720|gb|AI495717.1|AI495717
EST:     GCATCATTATGATGGGCCAAAGTTTCGTCTTGAAGCTG-CAGTTCCAGAG                         ACTTCTGGATCTGTTGGACCTATGTGAAC
genomic: GCATCATTATGATGGGCCAAAGTTTCGTCTTGA-GCTGTCAGTTCCAGAGgtatgaagga ... tatattgcagACT-CTGGATCTGTTGGACCTATGTGAAC