1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggatgttgttatgactggtatagttttcaaatatagtatgttctatttctttgctgatctacttgactatttcag
species | Glycine max |
transcript | GLYMA16G05470.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|15814086|gb|BI786361.1|BI786361
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|209711508|gb|BW681444.1|BW681444
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|213602669|gb|DB956605.1|DB956605
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|298191152|gb|HO038631.1|HO038631
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATEST: gi|16105980|gb|BI893720.1|BI893720
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGAT
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|213620335|gb|DB961480.1|DB961480
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|213587989|gb|DB957448.1|DB957448
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGEST: gi|19452653|gb|BM954063.1|BM954063
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCG
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|213602677|gb|DB956613.1|DB956613
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACEST: gi|151393069|gb|EV262944.1|EV262944
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggatgttgttatgactggtatagttttcaaatatagtatgttctatttctttgctgatctacttgactatttcag
- - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG