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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAGATGCTGCGAAGGCTCCACGAGCACCGGACGGAGTGGAATCATACATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAGgtttatttctctcaacttttatatatatatatatatatatatatatatatatatatatataatgtatatgtttgtgtgaaattaattaacgatatttacc...

Basic information

species Glycine max
transcript GLYMA16G04770.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057562|gb|CA800476.1|CA800476
EST:     ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAG                         TTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAGGCTTTAAAGG
genomic: ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAGgtttatttct ... ttgatttcagTTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAGGCTTTAAAGG
EST: gi|4293036|gb|AI441990.1|AI441990
EST:     ATAACGGAGATGTTCCTTAGGGGATAGAAATATTACCTCTATGTACACAG                         TTACTTGCGATACGGTATGCTAGCAGCTCGGGCAGAGGCTTTA
genomic: ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAGgtttatttct ... ttgatttcagTTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAGGCTTTA
EST: gi|151409575|gb|EV279383.1|EV279383
EST:     ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAG                         TTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAG-CTTT
genomic: ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAGgtttatttct ... ttgatttcagTTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAGGCTTT
EST: gi|13181122|gb|BG352462.1|BG352462
EST:     ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAG                         TTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAGGCTTTAAAGG
genomic: ATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAGgtttatttct ... ttgatttcagTTACTTGCGATACGGTATGCTAGCAGCTCGTGCAGAGGCTTTAAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACAGATGCTGCGAAGGCTCCACGAGCACCGGACGGAGTGGAATCATACATAACGGAGATGTTCCTTAGGGGAAAGAAATATTACCTCTATGTACACAGgtttatttctctcaacttttatatatatatatatatatatatatatatatatatatatataatgtatatgtttgtgtgaaattaattaacgatatttacc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA