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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCCAATGACCTTGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttattaaacatgtgtttcagagtaaattttgggagacttttacagttattatagttacctgatgtatctattatttaaactgtatgcag

Basic information

species Glycine max
transcript GLYMA16G04240.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670420|gb|BE191527.1|BE191527
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|8669740|gb|BE190847.1|BE190847
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|22522024|gb|BU080835.1|BU080835
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|22521984|gb|BU080795.1|BU080795
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|9564613|gb|BE474122.1|BE474122
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|213603185|gb|DB981039.1|DB981039
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|192333296|gb|FK026177.1|FK026177
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCACTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|12689966|gb|BG156302.1|BG156302
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|209727264|gb|BW663210.1|BW663210
EST:     TGTTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|9204537|gb|BE330761.1|BE330761
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|15286256|gb|BI470147.1|BI470147
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|10846169|gb|BF069133.1|BF069133
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|9259682|gb|BE347829.1|BE347829
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|4285986|gb|AI440982.1|AI440982
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCNTTGTTGTGTCCACCTCCTCCTCCCTTCT
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGC-TTGTTGTGTCCACCTCCTCCTCCCTTCT
EST: gi|6454893|gb|AW185503.1|AW185503
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|20815113|gb|BQ299591.1|BQ299591
EST:     GGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: GGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|26057207|gb|CA800121.1|CA800121
EST:     TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttatta ... ctgtatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCCAATGACCTTGCTGCTTCTCTCACTACCTTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtatttattaaacatgtgtttcagagtaaattttgggagacttttacagttattatagttacctgatgtatctattatttaaactgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG