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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAATCACGGATGCCAATGATTTAGATGTTCAATCTGAAGTGAATAATATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAGgtatataaatagcttctgtttggcagtttaattaaattttgtctttattcttgtccttaatgtattctgattctgtgctcaatttagttgaagtcttgaa...

Basic information

species Glycine max
transcript GLYMA16G03840.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146563|gb|AW508485.1|AW508485
EST:     ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAG                         GGATTGTACTCTACTTACATGCACAACCAAAGGAAATGCAAGCAT
genomic: ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAGgtatataaat ... gattgtttagGGATTGTACTCTACTTACATGCACAACCAAAGGAAATGCAAGCAT
EST: gi|6916457|gb|AW397987.1|AW397987
EST:     ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAG                         GGATTGTACTCTACTTACATGCACAACCAAAG
genomic: ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAGgtatataaat ... gattgtttagGGATTGTACTCTACTTACATGCACAACCAAAG
EST: gi|5753645|gb|AI960932.1|AI960932
EST:     ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAG                         GGATTGTACTCTACTTACATGCACAACCAAAGGAAATGCAAGCATAAGGTC
genomic: ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAGgtatataaat ... gattgtttagGGATTGTACTCTACTTACATGCACAACCAAAGGAAATGCAAGCATAAGGTC
EST: gi|213616958|gb|DB959270.1|DB959270
EST:     ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAG                         GGATTGTACTCTACTTACATGCACAACCAAAGGAAATGCAAGCATAAGGTC
genomic: ATTGTTGGATTGCATTTATTTGCAAAACAAAATTCGGAATTAGCTTCCAGgtatataaat ... gattgtttagGGATTGTACTCTACTTACATGCACAACCAAAGGAAATGCAAGCATAAGGTC