1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGCTGACTGAGAAGAGTGACGTGTATAGTTTTGGGATACTTATTATGGAAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaacttagaaaccttcaccaacacactcaacagttttgagattgttcattttatacttatctatgcagttctttctctagtttcccctaactgtggaagttggcattgttgcag
species | Glycine max |
transcript | GLYMA16G03650.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGEST: gi|31475026|gb|CD417054.1|CD417054
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: TACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGEST: gi|298178136|gb|HO027519.1|HO027519
genomic: TACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGEST: gi|6747050|gb|AW317506.1|AW317506
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGEST: gi|31472400|gb|CD414428.1|CD414428
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG GTTAATCTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGEST: gi|254335324|gb|GR846821.1|GR846821
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG GTT-ATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCTGACTGAGAAGAGTGACGTGTATAGTTTTGGGATACTTATTATGGAAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaacttagaaaccttcaccaacacactcaacagttttgagattgttcattttatacttatctatgcagttctttctctagtttcccctaactgtggaagttggcattgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA