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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatgaatttgctatgctgtgtgtgtgtgtgtgcaactgctgcctttctctcagttttgttaattaattggttgtatccttttcatcag

Basic information

species Glycine max
transcript GLYMA16G03170.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7041875|gb|AW471769.1|AW471769
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|21602194|gb|BQ612525.1|BQ612525
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|4436984|gb|AI522849.1|AI522849
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCCAT-
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCC-ATT
EST: gi|192315894|gb|FK008595.1|FK008595
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|13252441|gb|BG363352.1|BG363352
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6848438|gb|AW350728.1|AW350728
EST:     GAGTCNTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|15336852|gb|BI497508.1|BI497508
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|4397465|gb|AI496462.1|AI496462
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|19268986|gb|BM885242.1|BM885242
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192308475|gb|FK001377.1|FK001377
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGTTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|209701098|gb|BW664200.1|BW664200
EST:     GAGTCCTCAAAACACTTGAAATGGACGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192317627|gb|FK007581.1|FK007581
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|207837508|gb|GD809814.1|GD809814
EST:     GAGTCCTCAAAACACTTGAAATGGATAAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|7233168|gb|AW568517.1|AW568517
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151393465|gb|EV263340.1|EV263340
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|18040030|gb|BM308324.1|BM308324
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|7284984|gb|AW597471.1|AW597471
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|15814259|gb|BI786534.1|BI786534
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192315893|gb|FK008594.1|FK008594
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151412354|gb|EV282166.1|EV282166
EST:     GAGTCCTCAAAACACTTGAAGTGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|42722855|gb|CK768754.1|CK768754
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192317628|gb|FK007582.1|FK007582
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatga ... ttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGgtatttatgaatttgctatgctgtgtgtgtgtgtgtgcaactgctgcctttctctcagttttgttaattaattggttgtatccttttcatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA