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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtatgcatgtctttttttttcctttaacttttttagtgtatggttgtatgttacttgtttagaaaagatagaagtaccaagcttattttggtatttactattgtggcaaag

Basic information

species Glycine max
transcript GLYMA16G02880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g43130.1 (Oryza sativa), 5'ss of exon 5
TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtatgcatgtctttttttttcctttaacttttttagtgtatggttgtatgttacttgtttagaaaagatagaagtaccaagcttattttggtatttactattgtggcaaag
  || | || ||||||||| | | |||||||||||| || ||||||    | |||||| ||||||| || ||| | |||||||| |||||||||||||||||||     || | ||| || || || |   |||     || |   | || |   | |||  ||    ||    ||                                   
CCTATTGGATATGGGATTTAGAAGAGACATTGAGAAAATTATTGCTTTCATTCCTAAAGAACGACAGACACTTCTTTTTTCTGCTACTGTTCCAGAAGAGgtatc----tcctatttgttactataccccgtttctataatagcaatttgatttcttttttaaatgcttactgttag----------------------------------

upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G026371_T02 (Zea mays), 5'ss of exon 5
TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtatgcatgtctttttttttcctttaacttttttagtgtatggttgtatgttacttgtttagaaaagatagaagtaccaagcttattttggtatttactattgtggcaaag
  |  | || ||||||||| | | ||| |||||||| ||||||||| || | |||| | |||| ||||| ||  | |||||||| ||||||||||||||||||| | | | | | |  ||        |||| |  || |   |   |||  |||    |   |  | |||                                        
CCTGTTGGATATGGGATTTAGAAGAGATATTGAGAAAATAATTGCTTCAATTCCTAGAGAACGGCAAACACTGTTATTTTCTGCTACTGTTCCAGAAGAGgtatccctttttatctcattgtcccccattttatcctgaacaatctaatga-actgaagttctattgttag----------------------------------------

upper sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 5'ss of exon 6
TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtatgcatgtctttttttttcctttaacttttttagtgtatggttgtatgttacttgtttagaaaagatagaagtaccaagcttattttggtatttactattgtggcaaag
|||| |||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| ||  |||| |||||||| || |||||||||||             || || || ||    ||||||||| ||    | |||  ||| || |   ||   | |      |      ||||||||||||              
TTTATTAGACATGGGATTTCGTAAAGACATTGAGAAGATCATTGCTGCTGTTCCAAAACAGCGACAAACACTGCTGTTCTCTGCCACAGTCCCAGAAGAGgt-------------ttctttctgta----ttttagtgtgtgaa-atttgtctcttattgatttaattgaaattctgaagatcctttttggtatttag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996982|gb|BM086354.1|BM086354
EST:     TCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAG                         GTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAAT
genomic: TCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtatgcatgt ... tgtggcaaagGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAAT
EST: gi|15814026|gb|BI786301.1|BI786301
EST:     TCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAG                         GTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAAT
genomic: TCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtatgcatgt ... tgtggcaaagGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAAT