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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCTGACACTCATCCTGCACACAAGAAATTGCTTGATCCAACACACTACTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTATTGGTTTAAGAgtaagtttgtgccattacttatggatcaatgaatcaatcaatgatcactcttttgtgatgcaactttttgaggacattcatttagttcataataattgtgtatttgtcttgatcag

Basic information

species Glycine max
transcript GLYMA16G02490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 3
TTATGCTGACACTCATCCTGCACACAAGAAATTGCTTGATCCAACACACTACTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTATTGGTTTAAGAgtaagtt----tgtgccattacttatggatcaatgaatcaatcaatgatcactcttttgtgatgcaactttttgaggacattcatttagttcataataattgtgtatttgtcttgatcag
 ||| |||| ||||||||||| |||||||| |||||||||||| |   |||||| |||||||| ||||| || ||||| || ||  |  | ||| |||| || ||||    | || ||  | || ||| |   |   |||   ||| ||     |||    ||| |    ||  |||||| | ||||  |       ||        ||| ||  | |||
CTATACTGAGACTCATCCTGCCCACAAGAAGTTGCTTGATCCAGCTTGCTACTCCTCCATTGAGAGTGAACTGGTTTTCGTGGGGGTCGTAGGTCTAAGGgtgagttattatctgacaacatttctggtttgtt---tcagctaattat-----tttgaaaatgtataaattaaaggacacttattttctgtggggaaaaaaaac-cttgcctaaaacag