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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttcttgctgtagtctgcttgttcattctagttttcatttatctgttccattccattttaaatttgacaaagtttatacttctataatgtag

Basic information

species Glycine max
transcript GLYMA16G01680.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttcttgctgtagtctgcttgttcattctagttttcatttatct--gttccattcc-attttaaatttgacaaagtttatacttctataatgtag
|||||| |||||||||||| |||||||| ||||| |||||||| || || || |||||||||| |||| |  | | | | |  || |  |  ||| |  |  | ||| |   ||  |||  |||||   |||  | |  || ||  |  |  | ||  |      
GTGGATTTTACTATGGAAAGATCAAGTTCCCTCCAGAATATCCTTACAAGCCACCTGGAATCACgtaagctctttcgttct--tcagaattctcacttaaaatatcactctcctatgttttattcctggtttccaatcaactaaactactgttgctgcag-----

upper sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgta-atcc---ttcttgctgtagtctgcttgttcattctagttttcatttatctgttccattccattttaaatttgacaaagtttatacttctataatgtag
|||||| |||||||||||| |||||||||||||| || ||||| || || || || || || | |||  | |   |  || ||  |   |   | |  |   || | ||   | || |  |   | |  ||||  | |  || || | | |   | | |     ||
GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttccaatggttcctccaaattcagtctcaacattactcttacctcattt--tttgtccagttttttaatgaaccaaatctttttctgtttgcctcag

upper sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 6
GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttcttgctg-tagtctgcttgttc------attctagttttcatttatctgttccattccattt---taaatttgacaaagtttatacttcta----taatgtag----------------
||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| ||  | ||   | || |    || | |      ||  |   || | |||| | |    |||  | ||   | ||| |    | ||   | ||| ||    |||||  |                
GTGGATATTACTATGGAAAGATCAAATTTCCTCCAGAGTATCCATATAAACCTCCAGGAATCAGgtattctgtattctggctacttcaattttcccaagaaatattctgttgcttttagcagcagtattttacttatattaatgtattcatgtagttgcttttaattttaatgacgttttcctctcttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964448|gb|BM271183.1|BM271183
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGT
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGT
EST: gi|16349197|gb|BI974792.1|BI974792
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATC
EST: gi|15661834|gb|BI699205.1|BI699205
EST:     AGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: -GAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|151399625|gb|EV269496.1|EV269496
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|192330701|gb|FK022314.1|FK022314
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAA
EST: gi|13790033|gb|BG652624.1|BG652624
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC